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I have sliding glass doors and there is minerals that are deposited between the glass and I can't see out.

Is there a way that I can get rid of the of the deposits without taking the whole thing apart.

If it is between the glass, the seal is broken and there is no fix. Depending on how old it is, some manufacturers have a lifetime warranty and will replace it for free. But odds are that you are going to have to pay for a replacement, or live with it as it is. My mother had that happen to a couple of her windows, and it was pretty bad so she had to get them replaced. The cost was not too high, since she was able to reuse the frames, but there is no way to repair the seal without replacing the window.